U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC111890876 sucrose synthase [ Lactuca sativa (garden lettuce) ]

Gene ID: 111890876, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC111890876
Gene description
sucrose synthase
Locus tag
LSAT_V11C500271830
Gene type
protein coding
RefSeq status
MODEL
Organism
Lactuca sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC111890876 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2022_12 current Lsat_Salinas_v11 (GCF_002870075.4) 5 NC_056627.2 (268563472..268567516)
101 previous assembly Lsat_Salinas_v7 (GCF_002870075.2) 5 NC_056627.1 (242066045..242070074)

Chromosome 5 - NC_056627.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111888542 Neighboring gene 40S ribosomal protein S25 Neighboring gene agmatine deiminase-like Neighboring gene bifunctional dihydrofolate reductase-thymidylate synthase

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
sucrose synthase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_002870075.4-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lsat_Salinas_v11 Primary Assembly

Genomic

  1. NC_056627.2 Reference Lsat_Salinas_v11 Primary Assembly

    Range
    268563472..268567516
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023886979.3 → XP_023742747.1  sucrose synthase

    UniProtKB/TrEMBL
    A0A9R1VBJ4
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases