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LOC111890646 sulfoquinovosyl transferase SQD2 [ Lactuca sativa (garden lettuce) ]

Gene ID: 111890646, updated on 10-Oct-2024

Summary

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Gene symbol
LOC111890646
Gene description
sulfoquinovosyl transferase SQD2
Locus tag
LSAT_V11C500284850
Gene type
protein coding
RefSeq status
MODEL
Organism
Lactuca sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Genomic context

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See LOC111890646 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2022_12 current Lsat_Salinas_v11 (GCF_002870075.4) 5 NC_056627.2 (318516172..318520537, complement)
101 previous assembly Lsat_Salinas_v7 (GCF_002870075.2) 5 NC_056627.1 (292128398..292132766)

Chromosome 5 - NC_056627.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111890635 Neighboring gene protein ENHANCED PSEUDOMONAS SUSCEPTIBILITY 1 Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC111890634 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sulfoquinovosyl transferase SQD2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002870075.4-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lsat_Salinas_v11 Primary Assembly

Genomic

  1. NC_056627.2 Reference Lsat_Salinas_v11 Primary Assembly

    Range
    318516172..318520537 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023886751.3 → XP_023742519.1  sulfoquinovosyl transferase SQD2

    UniProtKB/TrEMBL
    A0A9R1VE45
Nucleotide Protein
Heading Accession and Version

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