U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC111885335 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 [ Lactuca sativa (garden lettuce) ]

Gene ID: 111885335, updated on 23-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC111885335
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1
Locus tag
LSAT_V11C500236310
Gene type
protein coding
RefSeq status
MODEL
Organism
Lactuca sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC111885335 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2022_12 current Lsat_Salinas_v11 (GCF_002870075.4) 5 NC_056627.2 (47081149..47087967)
101 previous assembly Lsat_Salinas_v7 (GCF_002870075.2) 5 NC_056627.1 (43247456..43254385)

Chromosome 5 - NC_056627.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111885340 Neighboring gene 5S ribosomal RNA Neighboring gene pentatricopeptide repeat-containing protein At4g18975, chloroplastic Neighboring gene putative pentatricopeptide repeat-containing protein At1g10330

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_002870075.4-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lsat_Salinas_v11 Primary Assembly

Genomic

  1. NC_056627.2 Reference Lsat_Salinas_v11 Primary Assembly

    Range
    47081149..47087967
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023881585.3 → XP_023737353.2  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 isoform X2

  2. XM_023881584.3 → XP_023737352.2  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases