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LOC111884397 uncharacterized LOC111884397 [ Lactuca sativa (garden lettuce) ]

Gene ID: 111884397, updated on 10-Oct-2024

Summary

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Gene symbol
LOC111884397
Gene description
uncharacterized LOC111884397
Locus tag
LSAT_V11C300114900
Gene type
protein coding
RefSeq status
MODEL
Organism
Lactuca sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Genomic context

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See LOC111884397 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2022_12 current Lsat_Salinas_v11 (GCF_002870075.4) 3 NC_056625.2 (47352358..47355697, complement)
101 previous assembly Lsat_Salinas_v7 (GCF_002870075.2) 3 NC_056625.1 (44723924..44727311, complement)

Chromosome 3 - NC_056625.2Genomic Context describing neighboring genes Neighboring gene transcription initiation factor TFIID subunit 15 Neighboring gene BTB/POZ domain-containing protein At1g50280 Neighboring gene large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic Neighboring gene delta(24)-sterol reductase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,6-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycolipid mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of mannosyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC111884397
Names
GPI mannosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002870075.4-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lsat_Salinas_v11 Primary Assembly

Genomic

  1. NC_056625.2 Reference Lsat_Salinas_v11 Primary Assembly

    Range
    47352358..47355697 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023880716.3 → XP_023736484.1  uncharacterized protein LOC111884397

    UniProtKB/TrEMBL
    A0A9R1W3P3

  2. XM_023880715.3 → XP_023736483.1  uncharacterized protein LOC111884397

    UniProtKB/TrEMBL
    A0A9R1W3P3

  3. XM_023880717.3 → XP_023736485.1  uncharacterized protein LOC111884397

    UniProtKB/TrEMBL
    A0A9R1W3P3
Nucleotide Protein
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