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LOC111880675 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 [ Lactuca sativa (garden lettuce) ]

Gene ID: 111880675, updated on 23-Nov-2023

Summary

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Gene symbol
LOC111880675
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Lactuca sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Genomic context

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See LOC111880675 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2022_12 current Lsat_Salinas_v11 (GCF_002870075.4) 7 NC_056629.2 (36991602..36998538)
101 previous assembly Lsat_Salinas_v7 (GCF_002870075.2) 7 NC_056629.1 (35633655..35640374)

Chromosome 7 - NC_056629.2Genomic Context describing neighboring genes Neighboring gene protein MODIFIED TRANSPORT TO THE VACUOLE 1-like Neighboring gene uncharacterized LOC128127218 Neighboring gene 2-oxoglutarate-dependent dioxygenase tropC Neighboring gene extensin-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002870075.4-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lsat_Salinas_v11 Primary Assembly

Genomic

  1. NC_056629.2 Reference Lsat_Salinas_v11 Primary Assembly

    Range
    36991602..36998538
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042896720.2 → XP_042752654.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1

    Conserved Domains (1) summary
    PLN03064
    Location:30 → 939
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Nucleotide Protein
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