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LOC111880627 hydroxyproline O-galactosyltransferase GALT2 [ Lactuca sativa (garden lettuce) ]

Gene ID: 111880627, updated on 10-Oct-2024

Summary

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Gene symbol
LOC111880627
Gene description
hydroxyproline O-galactosyltransferase GALT2
Locus tag
LSAT_V11C700354100
Gene type
protein coding
RefSeq status
MODEL
Organism
Lactuca sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Genomic context

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See LOC111880627 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2022_12 current Lsat_Salinas_v11 (GCF_002870075.4) 7 NC_056629.2 (41630711..41635985)
101 previous assembly Lsat_Salinas_v7 (GCF_002870075.2) 7 NC_056629.1 (40148816..40154089)

Chromosome 7 - NC_056629.2Genomic Context describing neighboring genes Neighboring gene dammarenediol II synthase Neighboring gene polyadenylate-binding protein 2 Neighboring gene uncharacterized LOC111880761 Neighboring gene uncharacterized LOC111880762

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002870075.4-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lsat_Salinas_v11 Primary Assembly

Genomic

  1. NC_056629.2 Reference Lsat_Salinas_v11 Primary Assembly

    Range
    41630711..41635985
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023877047.3 → XP_023732815.1  hydroxyproline O-galactosyltransferase GALT2

    UniProtKB/TrEMBL
    A0A9R1UZK0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases