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LOC111880602 glycoprotein 3-alpha-L-fucosyltransferase A [ Lactuca sativa (garden lettuce) ]

Gene ID: 111880602, updated on 23-Nov-2023

Summary

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Gene symbol
LOC111880602
Gene description
glycoprotein 3-alpha-L-fucosyltransferase A
Locus tag
LSAT_V11C400161750
Gene type
protein coding
RefSeq status
MODEL
Organism
Lactuca sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Genomic context

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See LOC111880602 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2022_12 current Lsat_Salinas_v11 (GCF_002870075.4) 4 NC_056626.2 (19146925..19151420, complement)
101 previous assembly Lsat_Salinas_v7 (GCF_002870075.2) 4 NC_056626.1 (16749735..16797753, complement)

Chromosome 4 - NC_056626.2Genomic Context describing neighboring genes Neighboring gene zinc finger protein GIS2-like Neighboring gene agamous-like MADS-box protein AGL27 Neighboring gene uncharacterized LOC111880640 Neighboring gene uncharacterized LOC111880229

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: glycoprotein 3-alpha-L-fucosyltransferase A
Names
putative fucosyltransferase-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002870075.4-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lsat_Salinas_v11 Primary Assembly

Genomic

  1. NC_056626.2 Reference Lsat_Salinas_v11 Primary Assembly

    Range
    19146925..19151420 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052770787.1 → XP_052626747.1  LOW QUALITY PROTEIN: glycoprotein 3-alpha-L-fucosyltransferase A

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases