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LOC111876874 rhamnogalacturonan I rhamnosyltransferase 1 [ Lactuca sativa (garden lettuce) ]

Gene ID: 111876874, updated on 10-Oct-2024

Summary

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Gene symbol
LOC111876874
Gene description
rhamnogalacturonan I rhamnosyltransferase 1
Locus tag
LSAT_V11C300137160
Gene type
protein coding
RefSeq status
MODEL
Organism
Lactuca sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Genomic context

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See LOC111876874 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2022_12 current Lsat_Salinas_v11 (GCF_002870075.4) 3 NC_056625.2 (156622362..156625654, complement)
101 previous assembly Lsat_Salinas_v7 (GCF_002870075.2) 3 NC_056625.1 (147261176..147264467, complement)

Chromosome 3 - NC_056625.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111876877 Neighboring gene transcription factor BIM2 Neighboring gene uncharacterized LOC111876872 Neighboring gene AUGMIN subunit 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhamnogalacturonan I rhamnosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002870075.4-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lsat_Salinas_v11 Primary Assembly

Genomic

  1. NC_056625.2 Reference Lsat_Salinas_v11 Primary Assembly

    Range
    156622362..156625654 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023873438.3 → XP_023729206.1  rhamnogalacturonan I rhamnosyltransferase 1

    UniProtKB/TrEMBL
    A0A9R1XHT8
Nucleotide Protein
Heading Accession and Version

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