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LOC111861717 carotenoid isomerooxygenase [ Cryptotermes secundus ]

Gene ID: 111861717, updated on 14-Dec-2023

Summary

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Gene symbol
LOC111861717
Gene description
carotenoid isomerooxygenase
Locus tag
B7P43_G04848
See related
EnsemblRapid:LOC111861717
Gene type
protein coding
RefSeq status
MODEL
Organism
Cryptotermes secundus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Polyneoptera; Dictyoptera; Blattodea; Blattoidea; Termitoidae; Kalotermitidae; Cryptotermitinae; Cryptotermes
Also known as
ninaB
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Genomic context

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See LOC111861717 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
101 current Csec_1.0 (GCF_002891405.2) Unplaced Scaffold NW_019723301.1 (762147..873658)

NW_019723301.1Genomic Context describing neighboring genes Neighboring gene endothelin-converting enzyme homolog Neighboring gene facilitated trehalose transporter Tret1-2 homolog Neighboring gene neprilysin-4 Neighboring gene uncharacterized LOC111861711 Neighboring gene short-chain specific acyl-CoA dehydrogenase, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019723301 Unplaced Scaffold Reference Csec_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-carotene 15,15'-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carotenoid dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carotene catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinal metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carotenoid isomerooxygenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cryptotermes secundus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Csec_1.0

Genomic

  1. NW_019723301.1 Reference Csec_1.0

    Range
    762147..873658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023846513.2 → XP_023702281.1  carotenoid isomerooxygenase isoform X4

    Related
    XP_023702281.1, XM_023846513.2

  2. XM_033750427.1 → XP_033606318.1  carotenoid isomerooxygenase isoform X1

    UniProtKB/TrEMBL
    A0A2J7RDY6
    Related
    XP_033606318.1, XM_033750427.1
    Conserved Domains (1) summary
    pfam03055
    Location:276 → 795
    RPE65; Retinal pigment epithelial membrane protein

  3. XM_033750428.1 → XP_033606319.1  carotenoid isomerooxygenase isoform X2

    UniProtKB/TrEMBL
    A0A2J7RDY6
    Related
    XP_033606319.1, XM_033750428.1
    Conserved Domains (1) summary
    pfam03055
    Location:276 → 763
    RPE65; Retinal pigment epithelial membrane protein

  4. XM_033750426.1 → XP_033606317.1  carotenoid isomerooxygenase isoform X1

    UniProtKB/TrEMBL
    A0A2J7RDY6
    Related
    XP_033606317.1, XM_033750426.1
    Conserved Domains (1) summary
    pfam03055
    Location:276 → 795
    RPE65; Retinal pigment epithelial membrane protein

  5. XM_033750429.1 → XP_033606320.1  carotenoid isomerooxygenase isoform X3

    UniProtKB/TrEMBL
    A0A2J7RDY6
    Related
    XP_033606320.1, XM_033750429.1
    Conserved Domains (1) summary
    pfam03055
    Location:276 → 736
    RPE65; Retinal pigment epithelial membrane protein

RNA

  1. XR_004512715.1 RNA Sequence

    Related
    XR_004512715.1
Nucleotide Protein
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