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cnot3a CCR4-NOT transcription complex, subunit 3a [ Paramormyrops kingsleyae ]

Gene ID: 111853336, updated on 15-Mar-2024

Summary

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Gene symbol
cnot3a
Gene description
CCR4-NOT transcription complex, subunit 3a
See related
Ensembl:ENSPKIG00000011733
Gene type
protein coding
RefSeq status
MODEL
Organism
Paramormyrops kingsleyae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Mormyridae; Paramormyrops
Also known as
cnot3
Orthologs
human zebrafish all
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Genomic context

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See cnot3a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current PKINGS_0.1 (GCF_002872115.1) Unplaced Scaffold NW_019713254.1 (512952..521165)

NW_019713254.1Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase subunit A3 Neighboring gene TCF3 (E2A) fusion partner Neighboring gene PRP31 pre-mRNA processing factor 31 homolog (yeast) Neighboring gene lemur tyrosine kinase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019713254 Unplaced Scaffold Reference PKINGS_0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of stem cell population maintenance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paramormyrops kingsleyae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PKINGS_0.1

Genomic

  1. NW_019713254.1 Reference PKINGS_0.1

    Range
    512952..521165
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023830104.1 → XP_023685872.1  CCR4-NOT transcription complex subunit 3 isoform X1

    UniProtKB/TrEMBL
    A0A3B3SK61, A0A3B3SMA6
    Related
    ENSPKIP00000031134.1, ENSPKIT00000011975.1

  2. XM_023830108.1 → XP_023685876.1  CCR4-NOT transcription complex subunit 3 isoform X2

    UniProtKB/TrEMBL
    A0A3B3SMA6

  3. XM_023830105.1 → XP_023685873.1  CCR4-NOT transcription complex subunit 3 isoform X1

    UniProtKB/TrEMBL
    A0A3B3SK61, A0A3B3SMA6

  4. XM_023830106.1 → XP_023685874.1  CCR4-NOT transcription complex subunit 3 isoform X1

    UniProtKB/TrEMBL
    A0A3B3SK61, A0A3B3SMA6

  5. XM_023830107.1 → XP_023685875.1  CCR4-NOT transcription complex subunit 3 isoform X1

    UniProtKB/TrEMBL
    A0A3B3SK61, A0A3B3SMA6
    Related
    ENSPKIP00000031176.1, ENSPKIT00000012017.1
Nucleotide Protein
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