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sgca sarcoglycan, alpha [ Paramormyrops kingsleyae ]

Gene ID: 111848657, updated on 15-Mar-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
See related
Ensembl:ENSPKIG00000021231
Gene type
protein coding
RefSeq status
MODEL
Organism
Paramormyrops kingsleyae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Mormyridae; Paramormyrops
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current PKINGS_0.1 (GCF_002872115.1) Unplaced Scaffold NW_019712466.1 (264191..273503, complement)

NW_019712466.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111848662 Neighboring gene collagen alpha-1(I) chain-like Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene protein phosphatase 1, regulatory subunit 9Ba

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019712466 Unplaced Scaffold Reference PKINGS_0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paramormyrops kingsleyae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PKINGS_0.1

Genomic

  1. NW_019712466.1 Reference PKINGS_0.1

    Range
    264191..273503 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023820862.1 → XP_023676630.1  alpha-sarcoglycan

    UniProtKB/TrEMBL
    A0A3B3QB45
    Related
    ENSPKIP00000003922.1, ENSPKIT00000027892.1
Nucleotide Protein
Heading Accession and Version

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