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vars1 valyl-tRNA synthetase 1 [ Paramormyrops kingsleyae ]

Gene ID: 111842945, updated on 15-Mar-2024

Summary

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Gene symbol
vars1
Gene description
valyl-tRNA synthetase 1
See related
Ensembl:ENSPKIG00000016304
Gene type
protein coding
RefSeq status
MODEL
Organism
Paramormyrops kingsleyae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Mormyridae; Paramormyrops
Also known as
vars
Orthologs
human zebrafish all
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Genomic context

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See vars1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
100 current PKINGS_0.1 (GCF_002872115.1) Unplaced Scaffold NW_019716187.1 (1846224..1860866)

NW_019716187.1Genomic Context describing neighboring genes Neighboring gene putative nuclease HARBI1 Neighboring gene transcription factor 19 (SC1), like Neighboring gene abhydrolase domain containing 16A, phospholipase Neighboring gene g6f-like Neighboring gene nectin cell adhesion molecule 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019716187 Unplaced Scaffold Reference PKINGS_0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables valine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in valyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
valine--tRNA ligase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paramormyrops kingsleyae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PKINGS_0.1

Genomic

  1. NW_019716187.1 Reference PKINGS_0.1

    Range
    1846224..1860866
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023810106.1 → XP_023665874.1  valine--tRNA ligase

    UniProtKB/TrEMBL
    A0A3B3T810, A0A3B3T846
    Related
    ENSPKIP00000038598.1, ENSPKIT00000019591.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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