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LOC111802050 uncharacterized LOC111802050 [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

Gene ID: 111802050, updated on 21-Dec-2023

Summary

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Gene symbol
LOC111802050
Gene description
uncharacterized LOC111802050
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucurbita pepo subsp. pepo (sub-species: pepo)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Genomic context

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See LOC111802050 in Genome Data Viewer
Location:
chromosome: LG09
Exon count:
17
Annotation release Status Assembly Chr Location
100 current ASM280686v2 (GCF_002806865.1) LG09 NC_036646.1 (3536600..3548619)

Chromosome LG09 - NC_036646.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111801638 Neighboring gene ABC transporter B family member 26, chloroplastic Neighboring gene inorganic phosphate transporter 2-1, chloroplastic-like Neighboring gene uncharacterized LOC111801817

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_036646.1 Chromosome LG09 Reference ASM280686v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC111802050

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM280686v2 Primary Assembly

Genomic

  1. NC_036646.1 Reference ASM280686v2 Primary Assembly

    Range
    3536600..3548619
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023686306.1 → XP_023542074.1  uncharacterized protein LOC111802050

    Conserved Domains (4) summary
    pfam03407
    Location:1470 → 1690
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase
    pfam10243
    Location:796 → 1009
    MIP-T3; Microtubule-binding protein MIP-T3
    pfam15996
    Location:471 → 602
    PNISR; Arginine/serine-rich protein PNISR
    cl25764
    Location:96 → 432
    PAT1; Topoisomerase II-associated protein PAT1
Nucleotide Protein
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