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LOC111801366 uncharacterized LOC111801366 [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

Gene ID: 111801366, updated on 21-Dec-2023

Summary

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Gene symbol
LOC111801366
Gene description
uncharacterized LOC111801366
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucurbita pepo subsp. pepo (sub-species: pepo)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Genomic context

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See LOC111801366 in Genome Data Viewer
Location:
chromosome: LG09
Exon count:
2
Annotation release Status Assembly Chr Location
100 current ASM280686v2 (GCF_002806865.1) LG09 NC_036646.1 (3598518..3601267)

Chromosome LG09 - NC_036646.1Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor ESR2-like Neighboring gene BTB/POZ domain-containing protein At1g67900-like Neighboring gene probable E3 ubiquitin-protein ligase XERICO Neighboring gene uncharacterized LOC111801710 Neighboring gene alpha-L-fucosidase 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_036646.1 Chromosome LG09 Reference ASM280686v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC111801366

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM280686v2 Primary Assembly

Genomic

  1. NC_036646.1 Reference ASM280686v2 Primary Assembly

    Range
    3598518..3601267
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023685342.1 → XP_023541110.1  uncharacterized protein LOC111801366

    Conserved Domains (1) summary
    pfam04724
    Location:43 → 390
    Glyco_transf_17; Glycosyltransferase family 17
Nucleotide Protein
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