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LOC111795497 callose synthase 5 [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

Gene ID: 111795497, updated on 21-Dec-2023

Summary

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Gene symbol
LOC111795497
Gene description
callose synthase 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucurbita pepo subsp. pepo (sub-species: pepo)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Genomic context

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See LOC111795497 in Genome Data Viewer
Location:
chromosome: LG05
Exon count:
43
Annotation release Status Assembly Chr Location
100 current ASM280686v2 (GCF_002806865.1) LG05 NC_036642.1 (7017218..7032421)

Chromosome LG05 - NC_036642.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111794563 Neighboring gene cation/H(+) antiporter 15-like Neighboring gene small nucleolar RNA J33 Neighboring gene protein trichome berefringence-like 7 Neighboring gene uncharacterized LOC111795677

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_036642.1 Chromosome LG05 Reference ASM280686v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM280686v2 Primary Assembly

Genomic

  1. NC_036642.1 Reference ASM280686v2 Primary Assembly

    Range
    7017218..7032421
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023677957.1 → XP_023533725.1  callose synthase 5

    Conserved Domains (3) summary
    pfam02364
    Location:1036 → 1779
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:46 → 153
    Vta1; Vta1 like
    pfam14288
    Location:321 → 434
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
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