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LOC111767452 histo-blood group ABO system transferase 1 [ Equus caballus (horse) ]

Gene ID: 111767452, updated on 14-Aug-2024

Summary

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Gene symbol
LOC111767452
Gene description
histo-blood group ABO system transferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
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Genomic context

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See LOC111767452 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 25 NC_009168.3 (40242937..40261135)

Chromosome 25 - NC_009168.3Genomic Context describing neighboring genes Neighboring gene calcium voltage-gated channel subunit alpha1 B Neighboring gene histo-blood group ABO system transferase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009168.3 Chromosome 25 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histo-blood group ABO system transferase 1; histo-blood group ABO system transferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009168.3 Reference EquCab3.0 Primary Assembly

    Range
    40242937..40261135
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023629535.1 → XP_023485303.1  histo-blood group ABO system transferase 1 isoform X2

    Conserved Domains (1) summary
    pfam03414
    Location:1 → 283
    Glyco_transf_6; Glycosyltransferase family 6

  2. XM_023629534.1 → XP_023485302.1  histo-blood group ABO system transferase 2 isoform X1

    UniProtKB/TrEMBL
    F7CFF4
    Conserved Domains (1) summary
    pfam03414
    Location:47 → 321
    Glyco_transf_6; Glycosyltransferase family 6
Nucleotide Protein
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