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LOC111758627 interferon-induced protein with tetratricopeptide repeats 1-like [ Dasypus novemcinctus (nine-banded armadillo) ]

Gene ID: 111758627, updated on 26-Oct-2023

Summary

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Gene symbol
LOC111758627
Gene description
interferon-induced protein with tetratricopeptide repeats 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Dasypus novemcinctus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Xenarthra; Cingulata; Dasypodidae; Dasypus
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Genomic context

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See LOC111758627 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_07 current mDasNov1.hap2 (GCF_030445035.1) 6 NC_080678.1 (51662251..51672294, complement)
102 previous assembly Dasnov3.0 (GCF_000208655.1) Unplaced Scaffold NW_004480705.1 (1083786..1141160, complement)

Chromosome 6 - NC_080678.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 16 member 12 Neighboring gene interferon induced protein with tetratricopeptide repeats 5 Neighboring gene interferon-induced protein with tetratricopeptide repeats 1B-like Neighboring gene uncharacterized LOC131278727

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interferon-induced protein with tetratricopeptide repeats 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030445035.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mDasNov1.hap2

Genomic

  1. NC_080678.1 Reference mDasNov1.hap2

    Range
    51662251..51672294 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004461422.4 → XP_004461479.1  interferon-induced protein with tetratricopeptide repeats 1-like

    See identical proteins and their annotated locations for XP_004461479.1

    Conserved Domains (3) summary
    sd00006
    Location:252 → 279
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:437 → 466
    TPR_1; Tetratricopeptide repeat
    pfam13424
    Location:54 → 127
    TPR_12; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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