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botv exostosin like glycosyltransferase 3 [ Eurytemora carolleeae ]

Gene ID: 111718430, updated on 17-Oct-2024

Summary

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Gene symbol
botv
Gene description
exostosin like glycosyltransferase 3
See related
EnsemblRapid:LOC111718430
Gene type
protein coding
RefSeq status
MODEL
Organism
Eurytemora carolleeae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Hexanauplia; Copepoda; Calanoida; Temoridae; Eurytemora
Orthologs
fruit fly all
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Genomic context

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See botv in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_10 current Eaff_2.0 (GCF_000591075.1) Unplaced Scaffold NW_019396091.1 (299627..311490, complement)

NW_019396091.1Genomic Context describing neighboring genes Neighboring gene nucleoredoxin-like protein 2 Neighboring gene Seryl-tRNA synthetase, mitochondrial Neighboring gene uncharacterized LOC111718424 Neighboring gene mitochondrial ribosomal protein L55 Neighboring gene heterogeneous nuclear ribonucleoprotein H2-like Neighboring gene aurora kinase A activator-like protein bora Neighboring gene zinc metalloproteinase nas-15

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019396091 Unplaced Scaffold Reference Eaff_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: exostosin-3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000591075.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eaff_2.0

Genomic

  1. NW_019396091.1 Reference Eaff_2.0

    Range
    299627..311490 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023494013.1 → XP_023349781.1  LOW QUALITY PROTEIN: exostosin-3-like

    Related
    XP_023349781.1, XM_023494013.1
    Conserved Domains (3) summary
    pfam03016
    Location:191 → 466
    Exostosin; Exostosin family
    pfam09258
    Location:628 → 875
    Glyco_transf_64; Glycosyl transferase family 64 domain
    pfam15898
    Location:74 → 137
    PRKG1_interact; cGMP-dependent protein kinase interacting domain
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases