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LOC111710496 irregular chiasm C-roughest protein [ Eurytemora carolleeae ]

Gene ID: 111710496, updated on 17-Oct-2024

Summary

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Gene symbol
LOC111710496
Gene description
irregular chiasm C-roughest protein
See related
EnsemblRapid:LOC111710496
Gene type
protein coding
RefSeq status
MODEL
Organism
Eurytemora carolleeae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Hexanauplia; Copepoda; Calanoida; Temoridae; Eurytemora
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Genomic context

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See LOC111710496 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current Eaff_2.0 (GCF_000591075.1) Unplaced Scaffold NW_019396956.1 (63612..66518, complement)

NW_019396956.1Genomic Context describing neighboring genes Neighboring gene unconventional myosin-XVIIIa Neighboring gene golgin subfamily A member 4 Neighboring gene uncharacterized LOC111710493 Neighboring gene uncharacterized LOC111710494

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019396956 Unplaced Scaffold Reference Eaff_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
irregular chiasm C-roughest protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000591075.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eaff_2.0

Genomic

  1. NW_019396956.1 Reference Eaff_2.0

    Range
    63612..66518 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023484599.1 → XP_023340367.1  irregular chiasm C-roughest protein

    Related
    XP_023340367.1, XM_023484599.1
    Conserved Domains (3) summary
    pfam13927
    Location:319 → 386
    Ig_3; Immunoglobulin domain
    cl11960
    Location:145 → 229
    Ig; Immunoglobulin domain
    cl28434
    Location:25 → 109
    I-set; Immunoglobulin I-set domain
Nucleotide Protein
Heading Accession and Version

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