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LOC111703032 alkylated DNA repair protein alkB homolog 8 [ Eurytemora carolleeae ]

Gene ID: 111703032, updated on 17-Oct-2024

Summary

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Gene symbol
LOC111703032
Gene description
alkylated DNA repair protein alkB homolog 8
See related
EnsemblRapid:LOC111703032
Gene type
protein coding
RefSeq status
MODEL
Organism
Eurytemora carolleeae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Hexanauplia; Copepoda; Calanoida; Temoridae; Eurytemora
Orthologs
fruit fly all
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Genomic context

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See LOC111703032 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_10 current Eaff_2.0 (GCF_000591075.1) Unplaced Scaffold NW_019396425.1 (325751..362996, complement)

NW_019396425.1Genomic Context describing neighboring genes Neighboring gene ribonucleoprotein PTB-binding 1 Neighboring gene uncharacterized LOC111703034 Neighboring gene uncharacterized LOC111703033 Neighboring gene STI1-like protein Neighboring gene uncharacterized LOC111703043

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019396425 Unplaced Scaffold Reference Eaff_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA wobble uridine modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkylated DNA repair protein alkB homolog 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000591075.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eaff_2.0

Genomic

  1. NW_019396425.1 Reference Eaff_2.0

    Range
    325751..362996 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023474877.1 → XP_023330645.1  alkylated DNA repair protein alkB homolog 8

    Related
    XP_023330645.1, XM_023474877.1
    Conserved Domains (3) summary
    pfam08241
    Location:410 → 500
    Methyltransf_11; Methyltransferase domain
    cl17169
    Location:32 → 107
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl21496
    Location:124 → 292
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
Heading Accession and Version

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