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ndst3 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 [ Seriola lalandi dorsalis ]

Gene ID: 111664067, updated on 15-Mar-2024

Summary

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Gene symbol
ndst3
Gene description
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
See related
Ensembl:ENSSLDG00000003978
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola lalandi dorsalis (sub-species: dorsalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
zebrafish all
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Genomic context

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See ndst3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Sedor1 (GCF_002814215.1) Unplaced Scaffold NW_019525135.1 (1283818..1328036)

NW_019525135.1Genomic Context describing neighboring genes Neighboring gene SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 Neighboring gene UDP glycosyltransferase 8 Neighboring gene serine protease 12 Neighboring gene methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019525135 Unplaced Scaffold Reference Sedor1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola lalandi dorsalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sedor1 Primary Assembly

Genomic

  1. NW_019525135.1 Reference Sedor1 Primary Assembly

    Range
    1283818..1328036
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023418528.1 → XP_023274296.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like isoform X2

    UniProtKB/TrEMBL
    A0A3B4WKT4
    Related
    ENSSLDP00000005066.1, ENSSLDT00000005230.1
    Conserved Domains (2) summary
    pfam00685
    Location:601 → 852
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:31 → 512
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_023418527.1 → XP_023274295.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like isoform X1

    Conserved Domains (2) summary
    pfam00685
    Location:601 → 852
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:31 → 512
    HSNSD; heparan sulfate-N-deacetylase

  3. XM_023418529.1 → XP_023274297.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4-like isoform X3

    Conserved Domains (2) summary
    pfam00685
    Location:601 → 797
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:31 → 512
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
Heading Accession and Version

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