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extl3 exostosin-like glycosyltransferase 3 [ Seriola lalandi dorsalis ]

Gene ID: 111661394, updated on 15-Mar-2024

Summary

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Gene symbol
extl3
Gene description
exostosin-like glycosyltransferase 3
See related
Ensembl:ENSSLDG00000024309
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola lalandi dorsalis (sub-species: dorsalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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See extl3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Sedor1 (GCF_002814215.1) Unplaced Scaffold NW_019525097.1 (4389373..4418338, complement)

NW_019525097.1Genomic Context describing neighboring genes Neighboring gene cytosolic 5'-nucleotidase 1A-like Neighboring gene synaptotagmin-14-like Neighboring gene ribosomal oxygenase 1 Neighboring gene NADH:ubiquinone oxidoreductase subunit B1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019525097 Unplaced Scaffold Reference Sedor1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola lalandi dorsalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sedor1 Primary Assembly

Genomic

  1. NW_019525097.1 Reference Sedor1 Primary Assembly

    Range
    4389373..4418338 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023414941.1 → XP_023270709.1  exostosin-like 3

    UniProtKB/TrEMBL
    A0A3B4Z942
    Related
    ENSSLDP00000031649.1, ENSSLDT00000032553.1
    Conserved Domains (3) summary
    pfam03016
    Location:183 → 496
    Exostosin; Exostosin family
    pfam09258
    Location:659 → 896
    Glyco_transf_64; Glycosyl transferase family 64 domain
    cl23720
    Location:79 → 143
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
Nucleotide Protein
Heading Accession and Version

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