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sgca sarcoglycan, alpha [ Seriola lalandi dorsalis ]

Gene ID: 111656184, updated on 15-Mar-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
See related
Ensembl:ENSSLDG00000011773
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola lalandi dorsalis (sub-species: dorsalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Sedor1 (GCF_002814215.1) Unplaced Scaffold NW_019524899.1 (999452..1003918, complement)

NW_019524899.1Genomic Context describing neighboring genes Neighboring gene putative all-trans-retinol 13,14-reductase Neighboring gene collagen, type I, alpha 1b Neighboring gene neurabin-2-like Neighboring gene histone-lysine N-methyltransferase PRDM9-like Neighboring gene transfer RNA glycine (anticodon CCC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019524899 Unplaced Scaffold Reference Sedor1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola lalandi dorsalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sedor1 Primary Assembly

Genomic

  1. NW_019524899.1 Reference Sedor1 Primary Assembly

    Range
    999452..1003918 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023407826.1 → XP_023263594.1  alpha-sarcoglycan-like

    UniProtKB/TrEMBL
    A0A3B4XT88
    Related
    ENSSLDP00000014738.1, ENSSLDT00000015306.1
    Conserved Domains (1) summary
    pfam05510
    Location:8 → 376
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

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