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galnt10 polypeptide N-acetylgalactosaminyltransferase 10 [ Seriola lalandi dorsalis ]

Gene ID: 111655084, updated on 7-Dec-2023

Summary

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Gene symbol
galnt10
Gene description
polypeptide N-acetylgalactosaminyltransferase 10
See related
Ensembl:ENSSLDG00000011278
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola lalandi dorsalis (sub-species: dorsalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
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Genomic context

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See galnt10 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Sedor1 (GCF_002814215.1) Unplaced Scaffold NW_019524856.1 (539566..602237)

NW_019524856.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 114 member A2 Neighboring gene microfibril associated protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019524856 Unplaced Scaffold Reference Sedor1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola lalandi dorsalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sedor1 Primary Assembly

Genomic

  1. NW_019524856.1 Reference Sedor1 Primary Assembly

    Range
    539566..602237
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023406333.1 → XP_023262101.1  polypeptide N-acetylgalactosaminyltransferase 10 isoform X1

    UniProtKB/TrEMBL
    A0A3B4XQY3
    Conserved Domains (2) summary
    cd02510
    Location:148 → 443
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:459 → 587
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_023406334.1 → XP_023262102.1  polypeptide N-acetylgalactosaminyltransferase 10 isoform X1

    UniProtKB/TrEMBL
    A0A3B4XQY3
    Conserved Domains (2) summary
    cd02510
    Location:148 → 443
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:459 → 587
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_023406335.1 → XP_023262103.1  polypeptide N-acetylgalactosaminyltransferase 10 isoform X2

    UniProtKB/TrEMBL
    A0A3B4XQY3
    Related
    ENSSLDP00000014138.1, ENSSLDT00000014670.1
    Conserved Domains (2) summary
    cd02510
    Location:91 → 386
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:402 → 530
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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