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unm_hu7910 un-named hu7910 [ Seriola lalandi dorsalis ]

Gene ID: 111651459, updated on 15-Mar-2024

Summary

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Gene symbol
unm_hu7910
Gene description
un-named hu7910
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola lalandi dorsalis (sub-species: dorsalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Annotation information
Annotation category: partial on reference assembly
Orthologs
zebrafish all
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Genomic context

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See unm_hu7910 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Sedor1 (GCF_002814215.1) Unplaced Scaffold NW_019524208.1 (5..9290)

NW_019524208.1Genomic Context describing neighboring genes Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene transfer RNA isoleucine (anticodon AAU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019524208 Unplaced Scaffold Reference Sedor1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola lalandi dorsalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sedor1 Primary Assembly

Genomic

  1. NW_019524208.1 Reference Sedor1 Primary Assembly

    Range
    5..9290
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023401400.1 → XP_023257168.1  aspartyl/asparaginyl beta-hydroxylase-like

    Conserved Domains (2) summary
    sd00006
    Location:179 → 204
    TPR; TPR repeat [structural motif]
    cl26002
    Location:97 → 264
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

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