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LOC111601617 irregular chiasm C-roughest protein [ Drosophila hydei ]

Gene ID: 111601617, updated on 10-May-2024

Summary

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Gene symbol
LOC111601617
Gene description
irregular chiasm C-roughest protein
See related
EnsemblRapid:LOC111601617
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila hydei
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
Orthologs
fruit fly all
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Genomic context

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See LOC111601617 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current DhydRS2 (GCF_003285905.1) Unplaced Scaffold NW_022045714.1 (1063088..1073327, complement)
100 previous assembly ASM278046v1 (GCF_002780465.1) Unplaced Scaffold NW_019379154.1 (190756..273043, complement)

NW_022045714.1Genomic Context describing neighboring genes Neighboring gene troponin T, cardiac muscle-like Neighboring gene uncharacterized LOC115483082 Neighboring gene estradiol 17-beta-dehydrogenase 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
irregular chiasm C-roughest protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila hydei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DhydRS2

Genomic

  1. NW_022045714.1 Reference DhydRS2

    Range
    1063088..1073327 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030224076.1 → XP_030079936.1  irregular chiasm C-roughest protein

    UniProtKB/TrEMBL
    A0A6J2SS43
    Related
    XP_030079936.1, XM_030224076.1
    Conserved Domains (4) summary
    smart00409
    Location:352 → 425
    IG; Immunoglobulin
    cd00096
    Location:277 → 337
    Ig; Immunoglobulin domain
    pfam08205
    Location:138 → 228
    C2-set_2; CD80-like C2-set immunoglobulin domain
    cl11960
    Location:428 → 524
    Ig; Immunoglobulin domain

RNA

  1. XR_003944232.1 RNA Sequence

    Related
    XR_003944232.1

  2. XR_003944233.1 RNA Sequence

    Related
    XR_003944233.1
Nucleotide Protein
Heading Accession and Version

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