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capn3a calpain 3a, (p94) [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111587838, updated on 18-Jun-2024

Summary

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Gene symbol
capn3a
Gene description
calpain 3a, (p94)
See related
Ensembl:ENSAOCG00000020523
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Orthologs
human zebrafish all
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Genomic context

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See capn3a in Genome Data Viewer
Location:
chromosome: 20
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 20 NC_072785.1 (26598780..26625451)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019375664.1 (58309..80022)

Chromosome 20 - NC_072785.1Genomic Context describing neighboring genes Neighboring gene glucosidase, alpha; neutral C Neighboring gene uncharacterized LOC129347783 Neighboring gene zinc finger protein 106a Neighboring gene proton activated chloride channel 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072785.1 Reference ASM2253959v1 Primary Assembly

    Range
    26598780..26625451
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055006057.1 → XP_054862032.1  calpain-3 isoform X1

    Related
    ENSAOCP00000064078.1, ENSAOCT00000037292.1

  2. XM_055006058.1 → XP_054862033.1  calpain-3 isoform X2

    Related
    ENSAOCP00000055080.1, ENSAOCT00000070259.1
Nucleotide Protein
Heading Accession and Version

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