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thoc3 THO complex 3 [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111578715, updated on 18-Jun-2024

Summary

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Gene symbol
thoc3
Gene description
THO complex 3
See related
Ensembl:ENSAOCG00000013548
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Orthologs
human zebrafish all
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Genomic context

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See thoc3 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 13 NC_072778.1 (3238418..3243839)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019373187.1 (87859..93234, complement)

Chromosome 13 - NC_072778.1Genomic Context describing neighboring genes Neighboring gene ganglioside GM2 activator Neighboring gene shootin 3 Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25-like Neighboring gene complexin 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of THO complex part of transcription export complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
THO complex subunit 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072778.1 Reference ASM2253959v1 Primary Assembly

    Range
    3238418..3243839
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023285652.3 → XP_023141420.1  THO complex subunit 3

    UniProtKB/TrEMBL
    A0A3Q1D440
    Related
    ENSAOCP00000025776.1, ENSAOCT00000016129.2
    Conserved Domains (2) summary
    cd00200
    Location:12 → 261
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:30 → 68
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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