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magoh mago homolog, exon junction complex subunit [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111576146, updated on 18-Jun-2024

Summary

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Gene symbol
magoh
Gene description
mago homolog, exon junction complex subunit
See related
Ensembl:ENSAOCG00000032845
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Orthologs
zebrafish all
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Genomic context

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See magoh in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 2 NC_072767.1 (28792128..28795419)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019372955.1 (207903..211200, complement)

Chromosome 2 - NC_072767.1Genomic Context describing neighboring genes Neighboring gene uridine-cytidine kinase 2a Neighboring gene apoptosis antagonizing transcription factor Neighboring gene carnitine palmitoyltransferase 2 Neighboring gene sterol carrier protein 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of exon-exon junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein mago nashi homolog
Names
mago homolog, exon junction complex core component

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072767.1 Reference ASM2253959v1 Primary Assembly

    Range
    28792128..28795419
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023281690.3 → XP_023137458.1  protein mago nashi homolog

    UniProtKB/TrEMBL
    A0A3Q1D1L8
    Related
    ENSAOCP00000054492.1, ENSAOCT00000052037.1
    Conserved Domains (1) summary
    cd11295
    Location:5 → 147
    Mago_nashi; Mago nashi proteins, integral members of the exon junction complex
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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