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wdhd1 WD repeat and HMG-box DNA binding protein 1 [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111575110, updated on 18-Jun-2024

Summary

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Gene symbol
wdhd1
Gene description
WD repeat and HMG-box DNA binding protein 1
See related
Ensembl:ENSAOCG00000018123
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Orthologs
human zebrafish all
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Genomic context

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See wdhd1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 1 NC_072766.1 (37431295..37459159, complement)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019372853.1 (18675..46585, complement)

Chromosome 1 - NC_072766.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129347573 Neighboring gene GTP cyclohydrolase 1 Neighboring gene suppressor of cytokine signaling 4 Neighboring gene C-myc promoter-binding protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA-templated DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear replication fork IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat and HMG-box DNA-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072766.1 Reference ASM2253959v1 Primary Assembly

    Range
    37431295..37459159 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023280040.2 → XP_023135808.1  WD repeat and HMG-box DNA-binding protein 1 isoform X2

    Related
    ENSAOCP00000061779.1, ENSAOCT00000062180.1
    Conserved Domains (5) summary
    smart00398
    Location:1017 → 1070
    HMG; high mobility group
    cd00200
    Location:10 → 289
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam05058
    Location:888 → 1075
    ActA; ActA Protein
    sd00039
    Location:21 → 54
    7WD40; WD40 repeat [structural motif]
    pfam12341
    Location:427 → 709
    Mcl1_mid; Minichromosome loss protein, Mcl1, middle region

  2. XM_023280039.3 → XP_023135807.1  WD repeat and HMG-box DNA-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1BLC7
    Related
    ENSAOCP00000013569.1, ENSAOCT00000021636.2
    Conserved Domains (5) summary
    smart00398
    Location:1018 → 1071
    HMG; high mobility group
    cd00200
    Location:10 → 289
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam05058
    Location:889 → 1076
    ActA; ActA Protein
    sd00039
    Location:21 → 54
    7WD40; WD40 repeat [structural motif]
    pfam12341
    Location:428 → 710
    Mcl1_mid; Minichromosome loss protein, Mcl1, middle region
Nucleotide Protein
Heading Accession and Version

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