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skic8 SKI8 subunit of superkiller complex [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111567133, updated on 18-Jun-2024

Summary

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Gene symbol
skic8
Gene description
SKI8 subunit of superkiller complex
See related
Ensembl:ENSAOCG00000007418
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Also known as
wdr61
Orthologs
human zebrafish all
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Genomic context

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See skic8 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 3 NC_072768.1 (20565932..20575903)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019371878.1 (146540..155736, complement)

Chromosome 3 - NC_072768.1Genomic Context describing neighboring genes Neighboring gene SIN3 transcription regulator family member Aa Neighboring gene cellular retinoic acid binding protein 1a Neighboring gene solute carrier family 25 member 44a Neighboring gene iron-responsive element binding protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cdc73/Paf1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SKI8 subunit of superkiller complex protein
Names
WD repeat domain 61

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072768.1 Reference ASM2253959v1 Primary Assembly

    Range
    20565932..20575903
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023268055.3 → XP_023123823.1  SKI8 subunit of superkiller complex protein

    UniProtKB/TrEMBL
    A0A3Q1C5Z5
    Related
    ENSAOCP00000022130.1, ENSAOCT00000008756.2
    Conserved Domains (2) summary
    cd00200
    Location:15 → 302
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:19 → 62
    7WD40; WD40 repeat [structural motif]

  2. XM_035947154.2 → XP_035803047.1  SKI8 subunit of superkiller complex protein

    UniProtKB/TrEMBL
    A0A3Q1C5Z5
    Related
    ENSAOCP00000076105.1, ENSAOCT00000072256.1
    Conserved Domains (2) summary
    cd00200
    Location:15 → 302
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:19 → 62
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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