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sh3rf1 SH3 domain containing ring finger 1 [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111566316, updated on 18-Jun-2024

Summary

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Gene symbol
sh3rf1
Gene description
SH3 domain containing ring finger 1
See related
Ensembl:ENSAOCG00000014372
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Orthologs
human zebrafish all
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Genomic context

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See sh3rf1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 2 NC_072767.1 (34621670..34656529)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019370019.1 (216729..251752)

Chromosome 2 - NC_072767.1Genomic Context describing neighboring genes Neighboring gene F-box and leucine-rich repeat protein 5 Neighboring gene NIMA-related kinase 1 Neighboring gene uncharacterized LOC118470066 Neighboring gene carbonyl reductase 4 Neighboring gene palladin, cytoskeletal associated protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase SH3RF1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072767.1 Reference ASM2253959v1 Primary Assembly

    Range
    34621670..34656529
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023266850.3 → XP_023122618.1  E3 ubiquitin-protein ligase SH3RF1

    UniProtKB/TrEMBL
    A0A3Q1B9K1, A0A3Q1CEW2
    Related
    ENSAOCP00000010143.1, ENSAOCT00000017117.2
    Conserved Domains (5) summary
    cd11785
    Location:815 → 869
    SH3_SH3RF_C; C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains
    cd11926
    Location:433 → 487
    SH3_SH3RF1_3; Third Src Homology 3 domain of SH3 domain containing ring finger 1, an E3 ubiquitin-protein ligase
    cd11927
    Location:133 → 186
    SH3_SH3RF1_1; First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase
    cd11930
    Location:196 → 250
    SH3_SH3RF1_2; Second Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase
    cl17238
    Location:8 → 55
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  2. XM_023266861.3 → XP_023122629.1  E3 ubiquitin-protein ligase SH3RF1

    UniProtKB/TrEMBL
    A0A3Q1B9K1, A0A3Q1CEW2
    Conserved Domains (5) summary
    cd11785
    Location:815 → 869
    SH3_SH3RF_C; C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains
    cd11926
    Location:433 → 487
    SH3_SH3RF1_3; Third Src Homology 3 domain of SH3 domain containing ring finger 1, an E3 ubiquitin-protein ligase
    cd11927
    Location:133 → 186
    SH3_SH3RF1_1; First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase
    cd11930
    Location:196 → 250
    SH3_SH3RF1_2; Second Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase
    cl17238
    Location:8 → 55
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
Heading Accession and Version

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