U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

si:ch73-62b13.1 Carbohydrate sulfotransferase 1-like [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111563369, updated on 18-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
si:ch73-62b13.1
Gene description
Carbohydrate sulfotransferase 1-like
See related
Ensembl:ENSAOCG00000022306
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See si:ch73-62b13.1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 3 NC_072768.1 (7900603..7908580, complement)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019376061.1 (67426..77612)

Chromosome 3 - NC_072768.1Genomic Context describing neighboring genes Neighboring gene uncharacterized si:ch211-106e7.2 Neighboring gene uncharacterized LOC111563370 Neighboring gene electron transfer flavoprotein subunit beta lysine methyltransferase Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene mitochondrial transcription termination factor 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables keratan sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
carbohydrate sulfotransferase 1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072768.1 Reference ASM2253959v1 Primary Assembly

    Range
    7900603..7908580 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023262418.3 → XP_023118186.2  carbohydrate sulfotransferase 1-like isoform X1

    Related
    ENSAOCP00000017271.2, ENSAOCT00000032636.2

  2. XM_035944531.2 → XP_035800424.1  carbohydrate sulfotransferase 1-like isoform X2

    UniProtKB/TrEMBL
    A0A3Q1CB08
    Conserved Domains (1) summary
    cl21551
    Location:209 → 394
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases