U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

kirrel1a kirre like nephrin family adhesion molecule 1a [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111562558, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
kirrel1a
Gene description
kirre like nephrin family adhesion molecule 1a
See related
Ensembl:ENSAOCG00000007505
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See kirrel1a in Genome Data Viewer
Location:
chromosome: 23
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 23 NC_072788.1 (5019095..5056131, complement)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019375988.1 (270969..307988)

Chromosome 23 - NC_072788.1Genomic Context describing neighboring genes Neighboring gene Fc epsilon receptor IgFc epsilon receptor Ig Neighboring gene NADH:ubiquinone oxidoreductase core subunit S2 Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene interleukin 13 receptor, alpha 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
kin of IRRE-like protein 1a

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072788.1 Reference ASM2253959v1 Primary Assembly

    Range
    5019095..5056131 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035943922.2 → XP_035799815.1  kin of IRRE-like protein 1a isoform X2

    UniProtKB/TrEMBL
    A0A3Q1AS37
    Conserved Domains (4) summary
    pfam13927
    Location:306 → 371
    Ig_3; Immunoglobulin domain
    cd00096
    Location:121 → 124
    Ig; Ig strand A [structural motif]
    cd05898
    Location:389 → 492
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:120 → 217
    Ig; Immunoglobulin domain

  2. XM_055007833.1 → XP_054863808.1  kin of IRRE-like protein 1a isoform X4

  3. XM_023261145.3 → XP_023116913.1  kin of IRRE-like protein 1a isoform X3

    UniProtKB/TrEMBL
    A0A3Q1ARK5, A0A3Q1AS37
    Related
    ENSAOCP00000062237.1, ENSAOCT00000064804.1
    Conserved Domains (4) summary
    cd05898
    Location:389 → 492
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:231 → 302
    IG_like; Immunoglobulin like
    pfam13927
    Location:306 → 371
    Ig_3; Immunoglobulin domain
    cl11960
    Location:137 → 217
    Ig; Immunoglobulin domain

  4. XM_023261143.3 → XP_023116911.1  kin of IRRE-like protein 1a isoform X1

    UniProtKB/TrEMBL
    A0A3Q1AS37
    Related
    ENSAOCP00000051768.1, ENSAOCT00000060474.1
    Conserved Domains (4) summary
    cd05898
    Location:389 → 492
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:231 → 302
    IG_like; Immunoglobulin like
    pfam13927
    Location:306 → 371
    Ig_3; Immunoglobulin domain
    cl11960
    Location:137 → 217
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases