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PHYH phytanoyl-CoA 2-hydroxylase [ Piliocolobus tephrosceles (Ugandan red Colobus) ]

Gene ID: 111550024, updated on 15-Mar-2024

Summary

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Gene symbol
PHYH
Gene description
phytanoyl-CoA 2-hydroxylase
See related
Ensembl:ENSPTEG00000027539
Gene type
protein coding
RefSeq status
MODEL
Organism
Piliocolobus tephrosceles
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Piliocolobus
Orthologs
human mouse all
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Genomic context

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See PHYH in Genome Data Viewer
Location:
chromosome: 9
Exon count:
9
Annotation release Status Assembly Chr Location
102 current ASM277652v3 (GCF_002776525.3) 9 NC_045442.1 (118108857..118132662)
100 previous assembly ASM277652v1 (GCF_002776525.1) Unplaced Scaffold NW_019317520.1 (5180332..5204166, complement)

Chromosome 9 - NC_045442.1Genomic Context describing neighboring genes Neighboring gene selenophosphate synthetase 1 Neighboring gene ribosomal biogenesis factor-like Neighboring gene uncharacterized LOC113224920 Neighboring gene small ubiquitin-related modifier 2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phytanoyl-CoA dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid alpha-oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phytanoyl-CoA dioxygenase, peroxisomal

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Piliocolobus tephrosceles Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM277652v3

Genomic

  1. NC_045442.1 Reference ASM277652v3

    Range
    118108857..118132662
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023223252.2 → XP_023079020.1  phytanoyl-CoA dioxygenase, peroxisomal isoform X1

    UniProtKB/TrEMBL
    A0A8C9I4E7
    Related
    ENSPTEP00000027741.1, ENSPTET00000038840.1
    Conserved Domains (1) summary
    pfam05721
    Location:61 → 279
    PhyH; Phytanoyl-CoA dioxygenase (PhyH)

  2. XM_023223253.1 → XP_023079021.1  phytanoyl-CoA dioxygenase, peroxisomal isoform X2

    UniProtKB/TrEMBL
    A0A8C9HW32, A0A8C9I4E7
    Related
    ENSPTEP00000027734.1, ENSPTET00000038833.1
    Conserved Domains (1) summary
    pfam05721
    Location:61 → 277
    PhyH; Phytanoyl-CoA dioxygenase (PhyH)

  3. XM_023223255.1 → XP_023079023.1  phytanoyl-CoA dioxygenase, peroxisomal isoform X4

    Conserved Domains (1) summary
    cl21496
    Location:61 → 189
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  4. XM_023223254.3 → XP_023079022.1  phytanoyl-CoA dioxygenase, peroxisomal isoform X3

    UniProtKB/TrEMBL
    A0A8C9I4E7
    Conserved Domains (1) summary
    pfam05721
    Location:46 → 264
    PhyH; Phytanoyl-CoA dioxygenase (PhyH)
Nucleotide Protein
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