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UBXN2B UBX domain protein 2B [ Piliocolobus tephrosceles (Ugandan red Colobus) ]

Gene ID: 111549234, updated on 15-Mar-2024

Summary

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Gene symbol
UBXN2B
Gene description
UBX domain protein 2B
See related
Ensembl:ENSPTEG00000037768
Gene type
protein coding
RefSeq status
MODEL
Organism
Piliocolobus tephrosceles
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Piliocolobus
Orthologs
human mouse all
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Genomic context

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See UBXN2B in Genome Data Viewer
Location:
chromosome: 7
Exon count:
9
Annotation release Status Assembly Chr Location
102 current ASM277652v3 (GCF_002776525.3) 7 NC_045440.1 (59235050..59275353)
100 previous assembly ASM277652v1 (GCF_002776525.1) Unplaced Scaffold NW_019317460.1 (11500550..11540854, complement)

Chromosome 7 - NC_045440.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L14-like Neighboring gene family with sequence similarity 110 member B Neighboring gene tyrosine-protein phosphatase non-receptor type 11 pseudogene Neighboring gene cytochrome P450 7A1 Neighboring gene syndecan binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in membrane fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear membrane reassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UBX domain-containing protein 2B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Piliocolobus tephrosceles Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM277652v3

Genomic

  1. NC_045440.1 Reference ASM277652v3

    Range
    59235050..59275353
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023222374.2 → XP_023078142.1  UBX domain-containing protein 2B isoform X1

    UniProtKB/TrEMBL
    A0A8C9IV41, A0A8C9LZK7
    Related
    ENSPTEP00000041152.1
    Conserved Domains (2) summary
    smart00553
    Location:140 → 232
    SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
    cd17161
    Location:250 → 331
    UBX_UBXN2B; Ubiquitin regulatory domain X (UBX) found in UBX domain protein 2B (UBXN2B) and similar proteins

  2. XM_023222375.1 → XP_023078143.1  UBX domain-containing protein 2B isoform X2

    UniProtKB/TrEMBL
    A0A8C9IVI7
    Related
    ENSPTEP00000041154.1, ENSPTET00000055034.1
    Conserved Domains (1) summary
    pfam08059
    Location:146 → 178
    SEP; SEP domain

RNA

  1. XR_002733653.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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