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SGCD sarcoglycan delta [ Piliocolobus tephrosceles (Ugandan red Colobus) ]

Gene ID: 111547154, updated on 15-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
See related
Ensembl:ENSPTEG00000014581
Gene type
protein coding
RefSeq status
MODEL
Organism
Piliocolobus tephrosceles
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Piliocolobus
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: 4
Exon count:
13
Annotation release Status Assembly Chr Location
102 current ASM277652v3 (GCF_002776525.3) 4 NC_045437.1 (133868567..134918046, complement)
100 previous assembly ASM277652v1 (GCF_002776525.1) Unplaced Scaffold NW_019317447.1 (326472..1365852)

Chromosome 4 - NC_045437.1Genomic Context describing neighboring genes Neighboring gene MICOS complex subunit MIC26 pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene T cell immunoglobulin and mucin domain containing 4 Neighboring gene 60S ribosomal protein L7 pseudogene Neighboring gene peptidyl-prolyl cis-trans isomerase G pseudogene Neighboring gene CST complex subunit STN1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Piliocolobus tephrosceles Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM277652v3

Genomic

  1. NC_045437.1 Reference ASM277652v3

    Range
    133868567..134918046 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023218788.1 → XP_023074556.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A8C9GYU5
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_023218786.2 → XP_023074554.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8C9GYU5, A0A8C9H091
    Related
    ENSPTEP00000012990.1
    Conserved Domains (1) summary
    pfam04790
    Location:24 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_023218787.1 → XP_023074555.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8C9GYU5, A0A8C9H091
    Conserved Domains (1) summary
    pfam04790
    Location:24 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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