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SGCA sarcoglycan alpha [ Piliocolobus tephrosceles (Ugandan red Colobus) ]

Gene ID: 111537566, updated on 15-Mar-2024

Summary

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Gene symbol
SGCA
Gene description
sarcoglycan alpha
See related
Ensembl:ENSPTEG00000034844
Gene type
protein coding
RefSeq status
MODEL
Organism
Piliocolobus tephrosceles
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Piliocolobus
Orthologs
human mouse all
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Genomic context

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See SGCA in Genome Data Viewer
Location:
chromosome: 16
Exon count:
10
Annotation release Status Assembly Chr Location
102 current ASM277652v3 (GCF_002776525.3) 16 NC_045449.1 (44318054..44329511, complement)
100 previous assembly ASM277652v1 (GCF_002776525.1) Unplaced Scaffold NW_019317027.1 (7696232..7711453)

Chromosome 16 - NC_045449.1Genomic Context describing neighboring genes Neighboring gene small ubiquitin-related modifier 2 pseudogene Neighboring gene collagen type I alpha 1 chain Neighboring gene spermatid-specific linker histone H1-like protein Neighboring gene protein phosphatase 1 regulatory subunit 9B Neighboring gene sterile alpha motif domain containing 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Piliocolobus tephrosceles Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM277652v3

Genomic

  1. NC_045449.1 Reference ASM277652v3

    Range
    44318054..44329511 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023204441.3 → XP_023060209.2  alpha-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A8C9IQH1
    Related
    ENSPTEP00000037223.1
    Conserved Domains (1) summary
    pfam05510
    Location:27 → 195
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_023204440.3 → XP_023060208.2  alpha-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8C9IM82
    Related
    ENSPTEP00000037221.1
    Conserved Domains (1) summary
    pfam05510
    Location:27 → 347
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

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