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ZNFX1 zinc finger NFX1-type containing 1 [ Piliocolobus tephrosceles (Ugandan red Colobus) ]

Gene ID: 111521007, updated on 15-Mar-2024

Summary

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Gene symbol
ZNFX1
Gene description
zinc finger NFX1-type containing 1
See related
Ensembl:ENSPTEG00000014914
Gene type
protein coding
RefSeq status
MODEL
Organism
Piliocolobus tephrosceles
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Piliocolobus
Orthologs
human mouse all
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Genomic context

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See ZNFX1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
15
Annotation release Status Assembly Chr Location
102 current ASM277652v3 (GCF_002776525.3) 20 NC_045453.1 (21891049..21924728, complement)
100 previous assembly ASM277652v1 (GCF_002776525.1) Unplaced Scaffold NW_019318081.1 (38685..72367, complement)

Chromosome 20 - NC_045453.1Genomic Context describing neighboring genes Neighboring gene staufen double-stranded RNA binding protein 1 Neighboring gene malate dehydrogenase, mitochondrial-like Neighboring gene DEAD-box helicase 27 Neighboring gene uncharacterized LOC111521009 Neighboring gene small nucleolar SNORD12/SNORD106 Neighboring gene small nucleolar SNORD12/SNORD106

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulatory ncRNA-mediated heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear RNA-directed RNA polymerase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NFX1-type zinc finger-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Piliocolobus tephrosceles Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM277652v3

Genomic

  1. NC_045453.1 Reference ASM277652v3

    Range
    21891049..21924728 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023184130.2 → XP_023039898.1  NFX1-type zinc finger-containing protein 1

    UniProtKB/TrEMBL
    A0A8C9LMQ6
    Conserved Domains (4) summary
    cd06008
    Location:1461 → 1505
    NF-X1-zinc-finger; Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger ...
    pfam13087
    Location:1051 → 1234
    AAA_12; AAA domain
    pfam15042
    Location:1484 → 1562
    LELP1; Late cornified envelope-like proline-rich protein 1
    cl26261
    Location:527 → 1253
    AAA_11; AAA domain

  2. XM_023184133.3 → XP_023039901.1  NFX1-type zinc finger-containing protein 1

    UniProtKB/TrEMBL
    A0A8C9LMQ6
    Conserved Domains (4) summary
    cd06008
    Location:1461 → 1505
    NF-X1-zinc-finger; Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger ...
    pfam13087
    Location:1051 → 1234
    AAA_12; AAA domain
    pfam15042
    Location:1484 → 1562
    LELP1; Late cornified envelope-like proline-rich protein 1
    cl26261
    Location:527 → 1253
    AAA_11; AAA domain

  3. XM_023184132.3 → XP_023039900.1  NFX1-type zinc finger-containing protein 1

    UniProtKB/TrEMBL
    A0A8C9LMQ6
    Related
    ENSPTEP00000013324.1
    Conserved Domains (4) summary
    cd06008
    Location:1461 → 1505
    NF-X1-zinc-finger; Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger ...
    pfam13087
    Location:1051 → 1234
    AAA_12; AAA domain
    pfam15042
    Location:1484 → 1562
    LELP1; Late cornified envelope-like proline-rich protein 1
    cl26261
    Location:527 → 1253
    AAA_11; AAA domain
Nucleotide Protein
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