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LOC111506246 aspartyl/asparaginyl beta-hydroxylase [ Leptinotarsa decemlineata (Colorado potato beetle) ]

Gene ID: 111506246, updated on 10-May-2024

Summary

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Gene symbol
LOC111506246
Gene description
aspartyl/asparaginyl beta-hydroxylase
See related
EnsemblRapid:LOC111506246
Gene type
protein coding
RefSeq status
MODEL
Organism
Leptinotarsa decemlineata
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Chrysomeloidea; Chrysomelidae; Chrysomelinae; Doryphorini; Leptinotarsa
Orthologs
fruit fly all
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Genomic context

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See LOC111506246 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Ldec_2.0 (GCF_000500325.1) Unplaced Scaffold NW_019290172.1 (11637..26780)

NW_019290172.1Genomic Context describing neighboring genes Neighboring gene striatin interacting protein Neighboring gene organic cation transporter protein-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019290172 Unplaced Scaffold Reference Ldec_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterizing Molecular Mechanisms of Imidacloprid Resistance in Select Populations of Leptinotarsa decemlineata in the Central Sands Region of Wisconsin. Clements J, et al. PLoS One, 2016. PMID 26821361, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Leptinotarsa decemlineata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ldec_2.0

Genomic

  1. NW_019290172.1 Reference Ldec_2.0

    Range
    11637..26780
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023161257.1 → XP_023017025.1  aspartyl/asparaginyl beta-hydroxylase

    Related
    XP_023017025.1, XM_023161257.1
    Conserved Domains (3) summary
    sd00006
    Location:438 → 466
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:577 → 728
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
    cl27017
    Location:417 → 544
    YfgC; Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Nucleotide Protein Strain
Heading Accession and Version

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