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LOC111458411 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [ Cucurbita moschata (crookneck pumpkin) ]

Gene ID: 111458411, updated on 22-Oct-2023

Summary

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Gene symbol
LOC111458411
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucurbita moschata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Genomic context

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See LOC111458411 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Cmos_1.0 (GCF_002738365.1) Unplaced Scaffold NW_019268537.1 (3207036..3212458, complement)

NW_019268537.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111458216 Neighboring gene AP-1 complex subunit gamma-2-like Neighboring gene potassium transporter 6-like Neighboring gene serine/arginine-rich splicing factor RSZ21-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019268537 Unplaced Scaffold Reference Cmos_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucurbita moschata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cmos_1.0

Genomic

  1. NW_019268537.1 Reference Cmos_1.0

    Range
    3207036..3212458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023101064.1 → XP_022956832.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    UniProtKB/TrEMBL
    A0A6J1GXG7
    Conserved Domains (1) summary
    cl28137
    Location:1 → 842
    Glyco_transf_20; Glycosyltransferase family 20

  2. XM_023101060.1 → XP_022956828.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    UniProtKB/TrEMBL
    A0A6J1GXG7
    Conserved Domains (1) summary
    cl28137
    Location:1 → 842
    Glyco_transf_20; Glycosyltransferase family 20

  3. XM_023101062.1 → XP_022956830.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    UniProtKB/TrEMBL
    A0A6J1GXG7
    Conserved Domains (1) summary
    cl28137
    Location:1 → 842
    Glyco_transf_20; Glycosyltransferase family 20

  4. XM_023101061.1 → XP_022956829.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    UniProtKB/TrEMBL
    A0A6J1GXG7
    Conserved Domains (1) summary
    cl28137
    Location:1 → 842
    Glyco_transf_20; Glycosyltransferase family 20
Nucleotide Protein
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