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LOC111450550 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [ Cucurbita moschata (crookneck pumpkin) ]

Gene ID: 111450550, updated on 22-Oct-2023

Summary

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Gene symbol
LOC111450550
Gene description
putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucurbita moschata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Genomic context

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See LOC111450550 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Cmos_1.0 (GCF_002738365.1) Unplaced Scaffold NW_019268528.1 (1818977..1824094)

NW_019268528.1Genomic Context describing neighboring genes Neighboring gene mitochondrial Rho GTPase 1-like Neighboring gene cyclin-P3-1-like Neighboring gene mitogen-activated protein kinase kinase kinase NPK1-like Neighboring gene microtubule-binding protein TANGLED

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019268528 Unplaced Scaffold Reference Cmos_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucurbita moschata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cmos_1.0

Genomic

  1. NW_019268528.1 Reference Cmos_1.0

    Range
    1818977..1824094
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023090744.1 → XP_022946512.1  putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5

    UniProtKB/TrEMBL
    A0A6J1G3X5
    Conserved Domains (1) summary
    cd02537
    Location:310 → 543
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
Nucleotide Protein
Heading Accession and Version

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