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LOC111445406 alkylated DNA repair protein alkB homolog 8-like [ Cucurbita moschata (crookneck pumpkin) ]

Gene ID: 111445406, updated on 22-Oct-2023

Summary

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Gene symbol
LOC111445406
Gene description
alkylated DNA repair protein alkB homolog 8-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucurbita moschata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Genomic context

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See LOC111445406 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Cmos_1.0 (GCF_002738365.1) Unplaced Scaffold NW_019268523.1 (280740..285085, complement)

NW_019268523.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g18520, chloroplastic-like Neighboring gene uncharacterized LOC111445405 Neighboring gene probable LL-diaminopimelate aminotransferase, chloroplastic Neighboring gene UPF0400 protein C337.03-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019268523 Unplaced Scaffold Reference Cmos_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA wobble uridine modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkylated DNA repair protein alkB homolog 8-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucurbita moschata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cmos_1.0

Genomic

  1. NW_019268523.1 Reference Cmos_1.0

    Range
    280740..285085 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023083755.1 → XP_022939523.1  alkylated DNA repair protein alkB homolog 8-like isoform X2

    UniProtKB/TrEMBL
    A0A6J1FLV5
    Conserved Domains (1) summary
    pfam08241
    Location:125 → 215
    Methyltransf_11; Methyltransferase domain

  2. XM_023083756.1 → XP_022939524.1  alkylated DNA repair protein alkB homolog 8-like isoform X3

    UniProtKB/TrEMBL
    A0A6J1FHF4
    Conserved Domains (1) summary
    cl17173
    Location:145 → 181
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  3. XM_023083753.1 → XP_022939521.1  alkylated DNA repair protein alkB homolog 8-like isoform X1

    UniProtKB/TrEMBL
    A0A6J1FG55
    Conserved Domains (1) summary
    pfam13649
    Location:177 → 264
    Methyltransf_25; Methyltransferase domain
Nucleotide Protein
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