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LOC111435616 callose synthase 3-like [ Cucurbita moschata (crookneck pumpkin) ]

Gene ID: 111435616, updated on 22-Oct-2023

Summary

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Gene symbol
LOC111435616
Gene description
callose synthase 3-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucurbita moschata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Genomic context

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See LOC111435616 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
44
Annotation release Status Assembly Chr Location
100 current Cmos_1.0 (GCF_002738365.1) Unplaced Scaffold NW_019268519.1 (4201173..4221745, complement)

NW_019268519.1Genomic Context describing neighboring genes Neighboring gene callose synthase 9-like Neighboring gene callose synthase 9-like Neighboring gene small nucleolar RNA J33 Neighboring gene ribosome biogenesis regulatory protein homolog Neighboring gene zinc finger CCCH domain-containing protein 14-like Neighboring gene protein NRT1/ PTR FAMILY 7.1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019268519 Unplaced Scaffold Reference Cmos_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucurbita moschata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cmos_1.0

Genomic

  1. NW_019268519.1 Reference Cmos_1.0

    Range
    4201173..4221745 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023073059.1 → XP_022928827.1  callose synthase 3-like

    UniProtKB/TrEMBL
    A0A6J1EL11
    Conserved Domains (3) summary
    pfam02364
    Location:1051 → 1810
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:48 → 175
    Vta1; Vta1 like
    pfam14288
    Location:319 → 432
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  2. XM_023073052.1 → XP_022928820.1  callose synthase 3-like

    UniProtKB/TrEMBL
    A0A6J1EL11
    Conserved Domains (3) summary
    pfam02364
    Location:1051 → 1810
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:48 → 175
    Vta1; Vta1 like
    pfam14288
    Location:319 → 432
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  3. XM_023073041.1 → XP_022928809.1  callose synthase 3-like

    UniProtKB/TrEMBL
    A0A6J1EL11
    Conserved Domains (3) summary
    pfam02364
    Location:1051 → 1810
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:48 → 175
    Vta1; Vta1 like
    pfam14288
    Location:319 → 432
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  4. XM_023073066.1 → XP_022928834.1  callose synthase 3-like

    UniProtKB/TrEMBL
    A0A6J1EL11
    Conserved Domains (3) summary
    pfam02364
    Location:1051 → 1810
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:48 → 175
    Vta1; Vta1 like
    pfam14288
    Location:319 → 432
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
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