U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC111434073 callose synthase 11 [ Cucurbita moschata (crookneck pumpkin) ]

Gene ID: 111434073, updated on 22-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC111434073
Gene description
callose synthase 11
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucurbita moschata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC111434073 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Cmos_1.0 (GCF_002738365.1) Unplaced Scaffold NW_019268560.1 (2927880..2934267, complement)

NW_019268560.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111434228 Neighboring gene uncharacterized LOC111434074 Neighboring gene small nucleolar RNA J33 Neighboring gene protein LOL2 Neighboring gene DNA ligase 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_019268560 Unplaced Scaffold Reference Cmos_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
callose synthase 11

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cucurbita moschata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cmos_1.0

Genomic

  1. NW_019268560.1 Reference Cmos_1.0

    Range
    2927880..2934267 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023071366.1 → XP_022927134.1  callose synthase 11

    UniProtKB/TrEMBL
    A0A6J1EN13
    Conserved Domains (2) summary
    pfam02364
    Location:880 → 1646
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:156 → 269
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  2. XM_023071367.1 → XP_022927135.1  callose synthase 11

    UniProtKB/TrEMBL
    A0A6J1EN13
    Conserved Domains (2) summary
    pfam02364
    Location:880 → 1646
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:156 → 269
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases