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LOC111434060 cellulose synthase A catalytic subunit 8 [UDP-forming]-like [ Cucurbita moschata (crookneck pumpkin) ]

Gene ID: 111434060, updated on 22-Oct-2023

Summary

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Gene symbol
LOC111434060
Gene description
cellulose synthase A catalytic subunit 8 [UDP-forming]-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucurbita moschata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Genomic context

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See LOC111434060 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
100 current Cmos_1.0 (GCF_002738365.1) Unplaced Scaffold NW_019268560.1 (2670186..2682475)

NW_019268560.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111434058 Neighboring gene uncharacterized LOC111434099 Neighboring gene receptor-like protein 51 Neighboring gene pentatricopeptide repeat-containing protein DOT4, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019268560 Unplaced Scaffold Reference Cmos_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 8 [UDP-forming]-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucurbita moschata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cmos_1.0

Genomic

  1. NW_019268560.1 Reference Cmos_1.0

    Range
    2670186..2682475
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023071352.1 → XP_022927120.1  cellulose synthase A catalytic subunit 8 [UDP-forming]-like

    UniProtKB/TrEMBL
    A0A6J1EMZ7
    Conserved Domains (3) summary
    sd00039
    Location:105 → 142
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:2 → 317
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl28038
    Location:383 → 1365
    Cellulose_synt; Cellulose synthase
Nucleotide Protein
Heading Accession and Version

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