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LOC111429801 probable xyloglucan 6-xylosyltransferase 5 [ Cucurbita moschata (crookneck pumpkin) ]

Gene ID: 111429801, updated on 22-Oct-2023

Summary

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Gene symbol
LOC111429801
Gene description
probable xyloglucan 6-xylosyltransferase 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucurbita moschata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Genomic context

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See LOC111429801 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Cmos_1.0 (GCF_002738365.1) Unplaced Scaffold NW_019268548.1 (973017..975001)

NW_019268548.1Genomic Context describing neighboring genes Neighboring gene protein NEN1-like Neighboring gene pentatricopeptide repeat-containing protein At5g61370, mitochondrial Neighboring gene uncharacterized LOC111430030 Neighboring gene probable xyloglucan 6-xylosyltransferase 5 Neighboring gene formin-like protein 20

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019268548 Unplaced Scaffold Reference Cmos_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan 6-xylosyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucurbita moschata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cmos_1.0

Genomic

  1. NW_019268548.1 Reference Cmos_1.0

    Range
    973017..975001
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023065809.1 → XP_022921577.1  probable xyloglucan 6-xylosyltransferase 5

    UniProtKB/TrEMBL
    A0A6J1E0W3
    Conserved Domains (1) summary
    PLN03182
    Location:36 → 448
    PLN03182; xyloglucan 6-xylosyltransferase; Provisional
Nucleotide Protein
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