U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC111429618 NFE2L2 motif-containing MPRA enhancer 215 [ Homo sapiens (human) ]

Gene ID: 111429618, updated on 17-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
LOC111429618
Gene description
NFE2L2 motif-containing MPRA enhancer 215
Gene type
biological region
Feature type(s)
regulatory: enhancer, transcriptional_cis_regulatory_region
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was predicted to be a cell type-specific enhancer based on chromatin state analysis from the ENCODE (ENCyclopedia Of DNA Elements) project. It was validated as a functional enhancer by high-throughput massively parallel reporter assays (MPRAs) in liver carcinoma HepG2 cells. This enhancer contains a conserved motif for the NFE2L2 activator. Mutation of this motif results in reduced enhancer activity. [provided by RefSeq, Nov 2017]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC111429618 in Genome Data Viewer
Location:
Xq
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (138925514..138925658)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (137235831..137235975)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (138007676..138007820)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor 13 Neighboring gene FGF13 antisense RNA 1 Neighboring gene NANOG hESC enhancer GRCh37_chrX:137842490-137843019 Neighboring gene MED14-independent group 3 enhancer GRCh37_chrX:137859976-137861175 Neighboring gene tropomyosin 2 pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chrX:138226529-138226732 Neighboring gene uncharacterized LOC124905222 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:138306638-138307247 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:138307248-138307856 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chrX:138423703-138424360 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:138424361-138425018 Neighboring gene SNRPN upstream open reading frame like (pseudogene)

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See Variation Viewer (GRCh37.p13)

General gene information

Go to the top of the page Help

Other Names

  • NFE2L2 activator MPRA enhancer 215
  • massively parallel reporter assay enhancer 215

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_055894.1 

    Range
    101..245
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    138925514..138925658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    137235831..137235975
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases