U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC111335085 beta-1,4-N-acetylgalactosaminyltransferase 3-like [ Stylophora pistillata ]

Gene ID: 111335085, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC111335085
Gene description
beta-1,4-N-acetylgalactosaminyltransferase 3-like
Locus tag
AWC38_SpisGene13734
See related
EnsemblRapid:LOC111335085
Gene type
protein coding
RefSeq status
MODEL
Organism
Stylophora pistillata
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Pocilloporidae; Stylophora
Also known as
B4galnt4
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC111335085 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Stylophora pistillata v1 (GCF_002571385.1) Unplaced Scaffold NW_019218046.1 (272645..286536)

NW_019218046.1Genomic Context describing neighboring genes Neighboring gene sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like Neighboring gene uncharacterized LOC111335087 Neighboring gene melanopsin-like Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene transfer RNA threonine (anticodon UGU)

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_019218046 Unplaced Scaffold Reference Stylophora pistillata v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Identification of microRNAs in the coral Stylophora pistillata. Liew YJ, et al. PLoS One, 2014. PMID 24658574, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
beta-1,4-N-acetylgalactosaminyltransferase 3-like
Names
N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Stylophora pistillata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Stylophora pistillata v1 Primary Assembly

Genomic

  1. NW_019218046.1 Reference Stylophora pistillata v1 Primary Assembly

    Range
    272645..286536
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022940933.1 → XP_022796668.1  beta-1,4-N-acetylgalactosaminyltransferase 3-like

    UniProtKB/TrEMBL
    A0A2B4RZV4
    Related
    XP_022796668.1, XM_022940933.1
    Conserved Domains (2) summary
    cl08459
    Location:49 → 149
    PA14; PA14 domain
    cl11394
    Location:305 → 555
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_022940932.1 → XP_022796667.1  beta-1,4-N-acetylgalactosaminyltransferase 3-like

    UniProtKB/TrEMBL
    A0A2B4RZV4
    Related
    XP_022796667.1, XM_022940932.1
    Conserved Domains (2) summary
    cl08459
    Location:49 → 149
    PA14; PA14 domain
    cl11394
    Location:305 → 555
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.