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LOC111329220 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3-like [ Stylophora pistillata ]

Gene ID: 111329220, updated on 7-Dec-2023

Summary

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Gene symbol
LOC111329220
Gene description
procollagen-lysine,2-oxoglutarate 5-dioxygenase 3-like
See related
EnsemblRapid:LOC111329220
Gene type
protein coding
RefSeq status
MODEL
Organism
Stylophora pistillata
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Pocilloporidae; Stylophora
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Genomic context

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See LOC111329220 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current Stylophora pistillata v1 (GCF_002571385.1) Unplaced Scaffold NW_019217913.1 (403134..420068)

NW_019217913.1Genomic Context describing neighboring genes Neighboring gene nuclease-sensitive element-binding protein 1-like Neighboring gene mediator of RNA polymerase II transcription subunit 18-like Neighboring gene uncharacterized LOC111329223 Neighboring gene uncharacterized LOC111329233 Neighboring gene transfer RNA serine (anticodon GGA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019217913 Unplaced Scaffold Reference Stylophora pistillata v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-lysine 5-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen-lysine,2-oxoglutarate 5-dioxygenase 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Stylophora pistillata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Stylophora pistillata v1 Primary Assembly

Genomic

  1. NW_019217913.1 Reference Stylophora pistillata v1 Primary Assembly

    Range
    403134..420068
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022933851.1 → XP_022789586.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 3-like

    Related
    XP_022789586.1, XM_022933851.1
    Conserved Domains (1) summary
    smart00702
    Location:567 → 730
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
Nucleotide Protein
Heading Accession and Version

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